T. A. Knijnenburg, J. Lin, H. Rovira, J. Boyle, I. Shmulevich, “EPEPT: A web service for enhanced P-value estimation in permutation tests,BMC Bioinformatics, Vol. 12, No. 411, 2011.

D. Yang, S. Khan, Y. Sun, K. Hess, I. Shmulevich, A. K. Sood, W. Zhang, “Association of BRCA1 and BRCA2 Mutations With Survival, Chemotherapy Sensitivity, and Gene Mutator Phenotype in Patients With Ovarian Cancer,” JAMA: the journal of the American Medical Association, Vol. 306, No. 14, pp. 1557-1565, 2011.

T. Knijnenburg, O. Roda, Y. Wan, G. Nolan, J. Aitchison, I. Shmulevich, “A regression model approach to enable cell morphology correction in high-throughput flow cytometry,” Molecular Systems Biology, Vol. 7, No. 531, 2011.

 A. V. Ratushny, I. Shmulevich, J. D. Aitchison, “Trade-off between responsiveness and noise suppression in biomolecular system responses to environmental cues,” PLoS Computational Biology, Vol. 7, No. 6, e1002091, 2011.
D. Falconnet, A. Niemistö, R. J. Taylor, M. Ricicova, T. Galitski, I. Shmulevich, C. L. Hansen, “High-throughput tracking of single yeast cells in a microfluidic imaging matrix,” Lab on a Chip, Vol. 11, pp. 466-473, 2011.