S. A. Kauffman, R. K. Logan, R. Este, R. Goebel, D. Hobill, I. Shmulevich, “Propagating Organization: An Enquiry,” Biology and Philosophy, Vol. 23, No. 1, pp. 27-45, 2007.

R. Vêncio, I. Shmulevich, “ProbCD: enrichment analysis accounting for categorization uncertainty,” BMC Bioinformatics, Vol. 8, No. 383, 2007.

P. Krawitz, I. Shmulevich, “Entropy of complex relevant components in Boolean networks,”Physical Review E, Vol. 76, 036115, 2007.

N. D. Price, I. Shmulevich, “Biochemical and statistical network models for systems biology,”Current Opinion in Biotechnology, Vol. 18, pp. 365-370, 2007.

R. Vêncio, L. Varuzza, C. Pereira, H. Brentani, I. Shmulevich, “Simcluster: clustering enumeration gene expression data on the simplex space,” BMC Bioinformatics, Vol. 8, No. 246, 2007.

M. Ahdesmäki , H. Lähdesmäki, A. Gracey , I. Shmulevich and O. Yli-Harja, “Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data,” BMC Bioinformatics, Vol. 8, No. 233, 2007.

P. Krawitz, I. Shmulevich, “Basin Entropy in Boolean Network Ensembles,” Physical Review Letters, Vol. 98, No. 15, pp. 158701, 2007.

N. D. Price, J. Trent, A. K. El-Naggar, D. Cogdell, E. Taylor, K. K. Hunt, R. E. Pollock, L. Hood, I. Shmulevich, W. Zhang, “Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas,” Proceedings of the National Academy of Sciences of the USA, Vol. 104, No. 9, pp- 3414-3419, 2007.