A. Niemistö, V. Dunmire, O. Yli-Harja, W. Zhang, I. Shmulevich, “Analysis of angiogenesis using in vitro experiments and stochastic growth models,” Physical Review E, Vol. 72, 062902, 2005.
T. Toulouse, P. Ao, I. Shmulevich, S. A. Kauffman, “Noise in a Small Genetic Circuit that Undergoes Bifurcation,” Complexity, Vol. 11, No. 1, pp. 45-51, 2005.
I. Shmulevich, S. A. Kauffman, M. Aldana, “Eukaryotic cells are dynamically ordered or critical but not chaotic” Proceedings of the National Academy of Sciences of the USA, Vol. 102, No. 38, pp. 13439-13444, 2005.
M. Brun, E. R. Dougherty, I. Shmulevich, “Steady-State Probabilities for Attractors in Probabilistic Boolean Networks,” Signal Processing, Vol. 85, No. 4, pp. 1993-2013, 2005.
I. Shmulevich, “The prospect of systems biology for toxicology,” Igaku no Ayumi (Journal of Clinical and Experimental Medicine), Vol. 213, No. 4, pp. 269-272, 2005 (in Japanese).
E. Lee, C. Mircean, I. Shmulevich, H. Wang, J. Liu, A. Niemistö, J. Kavanagh, JH Lee, W. Zhang, “Insulin-like growth factor binding protein 2 promotes ovarian cancer cell invasion” Molecular Cancer, Feb 02;4(1):7, 2005.
A. Niemistö, V. Dunmire, O. Yli-Harja, W. Zhang, I. Shmulevich, “Robust quantification of in vitro angiogenesis through image analysis,” IEEE Transactions on Medical Imaging, Vol. 24, No. 4, pp. 549-553, 2005.
C. Mircean, I. Shmulevich, D. Cogdell, W. Choi, Y. Jia, I. Tabus, S. R. Hamilton, W. Zhang, “Robust estimation of protein expression ratios with lysate microarray technology,” Bioinformatics, Vol. 21, No. 9, pp. 1935-1942, 2005.
H. Lähdesmäki, I. Shmulevich, V. Dunmire, O. Yli-Harja, W. Zhang, “In Silico Microdissection of Microarray Data from Heterogeneous Cell Populations,” BMC Bioinformatics 6:54, 2005.
G. N. Fuller, C. Mircean, I. Tabus, E. Taylor, R. Sawaya, J. M. Bruner, I. Shmulevich, W. Zhang, “Molecular voting for glioma classification reflecting heterogeneity in the continuum of cancer progression,” Oncology Reports, Vol. 14, pp. 651-656, 2005.