I. Shmulevich, S. A. Kauffman, “Activities and Sensitivities in Boolean Network Models,” Physical Review Letters, Vol. 93, No. 4, pp. 048701(1-4), 2004. [Supplementary material available here]
I. Shmulevich, “Book review: Guide to analysis of DNA microarray data, second edition,” Bulletin of Mathematical Biology, Vol. 66, pp. 1939-1942, 2004.
R. F. Hashimoto, S. Kim, I. Shmulevich, W. Zhang, M. L. Bittner, E. R. Dougherty, “Growing genetic regulatory networks from seed genes,” Bioinformatics, Vol. 20, No. 8, pp. 1241-1247, 2004.
E. R. Dougherty, I. Shmulevich, M. L. Bittner, “Genomic Signal Processing: The Salient Issues,” EURASIP Journal on Applied Signal Processing, Vol. 2004, No. 1, pp. 146-153, 2004.
H. Lähdesmäki, X. Hao, B. Sun, L. Hu, O. Yli-Harja, I. Shmulevich, and W. Zhang, “Distinguishing key biological pathways between primary breast cancers and their lymph node metastases by gene function-based clustering analysis,” International Journal of Oncology, Vol. 24, No. 6, pp. 1589–1596, June 2004.
X. Hao, B. Sun, L. Hu, H. Lähdesmäki, V. Dunmire, Y. Feng, S.-W. Zhang, H. Wang, C. Wu, H. Wang, G. N. Fuller, W. F. Symmans, I. Shmulevich, and W. Zhang, “Differential gene and protein expression in primary breast malignancies and their lymph node metastases as revealed by combined cDNA microarray and tissue microarray analysis,” Cancer, Vol. 100, No. 6, pp. 1110-1122, 2004.
C. Mircean, I. Tabus, T. Kobayashi, M. Yamaguchi, H. Shiku, I. Shmulevich, W. Zhang, “Pathway Analysis of Informative Genes from Microarray Data Reveals that Metabolism and Signal Transduction Genes Distinguish Different Subtypes of Lymphomas,” International Journal of Oncology, Vol. 24, No. 3, pp. 497-504, 2004.